This prototype page illustrates the pmesh "inline" idea in conjunction with embedded "#jmolscript:" on the second line of an XYZ or MOL file.

inline pmesh and embedded #jmolscript commands

in light of the draw command, inline pmesh already may be obsolete. But maybe not...
• pmesh "10x10pmesh.txt";
see data/10x10pmesh.txt
• pmesh "testpmesh.txt";
see data/testpmesh.txt in this next file there is an embedded jmolscript command.
• load water_pmesh.xyz;
• pmesh test1 "inline" "1 {2. 0. 0.} 0";color $test1 white;pmesh test1 dots
• pmesh test2 "inline" "2 {4. 0. 0.} {2. 0. 0.} 1 {3 0 1 0}";color $test2 orange
you do not have to add the braces, but I find them useful for reading what I have entered
• pmesh test2 "inline" "2 4. 0. 0. 2. 0. 0. 1 3 0 1 0";color $test2 orange
• pmesh test3 "inline" "3 {-0.49, -2.8, -1.2} {-2.2, 0.80, 1.09} {1.89, 2.12, 0.42} 1 {4 0 1 2 0}";color $test3 yellow
• pmesh test4 "inline" "4 {0., 0., 0.} {0., 2., 0.} {2., 2., 0.} {2., 0., 0.} 1 {5 0 1 2 3 0}";color $test4 translucent red




2. draw alternative is more flexible

• load caffeine2.xyz;draw triangle1 150 (atomno=1) (atomno=14) (atomno=15);draw line2 200 $triangle1 (atomno=10);color $line2 translucent green
• draw line1 150 (atomno=1) (atomno=2);color $line1 yellow
• draw line1 300 (oxygen) (nitrogen);spin $line1 30
• draw triangle1 400
• draw line1 100;draw triangle1 100
• color $triangle1 red;color $line1 blue
• draw triangle2 200 $triangle1 (atomno=9) (atomno=11);color $triangle2 green
• draw square1 {1 1 1} {1 0 1} {0 0 1} {0 1 1};refresh;moveto 1.0 -946 -305 108 58.3;color $square1 yellow




1. "fixed" keyworda and multiple models

• load cyclohexane_movie.xyz
• draw line1 250 (atomno=2) (atomno=5);draw line2 200 (atomno=4 or atomno=3) (atomno=1 or atomno=6);
note that the "line" is really several, in several different models
• animation on
• spin $line1 30
• spin $line2 30
• spin off
• animation off
both draw and pmesh can take the FIXED keyword to indicate that the object is to be "fixed" in space, not "modelbased"
• load cyclohexane_movie.xyz
• draw line1 FIXED {0 0 0} {2 2 2}
• frame 1
• frame next
• frame play

[appletInfo] [animationInfo] [fileName] [fileHeader] [fileContents]
[atomList] [atomInfo] [bondInfo] [extractModel]
[orientationInfo] [transformInfo] [centerInfo] [boundboxInfo]
[modelInfo] [polymerInfo] [chainInfo] [shapeInfo] [stateInfo] [reload THIS orientation]

Decoded: new window