@source http://chemapps.stolaf.edu/jmol/jsmol
@author hansonr@stolaf.edu project started 8/26/2012

revision 8:11 AM 11/22/2012  -- color Labels fix; adds _version information; adds Jmol.debugCode (true to skip core.z.js)

revision 11/21/2012 10:26:18 AM  -- Spartan binary file reading, measurements working

revision 9:20 PM 11/18/2012  -- full threading -- hover, spin, animation, vibration, timeout, delay, moveto

revision 1:19 PM 11/13/2012  -- full binary file reading on all tested browsers

revision 12:32 PM 11/2/2012  -- java/jmolcore.z.js

revision 10/29/2012 2:18:47 PM

JSmol -- Java(Script) web-based molecular viewer

see jmol.sourceforge.net  jsmol.sourceforge.net

http://chemapps.stolaf.edu/jmol/jsmol/test2.htm

This zip directory contains the work in progress toward
a complete Java->JavaScript code conversion for Jmol. 

Note that JSmol is not a <i>different</i> program than Jmol.
JSmol <i>is</i> Jmol, just compiled into JavaScript as well as Java byte code.
All development is done working with the trunk Jmol Java source, 
but compilation of that code creates both Java .class files and equivalent JavaScript .js files 

As such, JSmol has just about all of the features of Jmol: 

 full file reading (including binary formats)
 full Jmol scripting (including atom selection and Jmol Math)
 full Jmol shape object support
  
Status:

 complete Jmol code implementation in JavaScript
 Java2Script js compiler adapted successfully
 WebGL: full, fast rendering, including cartoons and isosurfaces (vdw, sasurface)
 HTML5: slower rendering; but a full implementation of Jmol, including translucency and labels
 color-mapped isosurfaces working
 cartoons all working
 full scripting capability
 full cross-domain database access using jQuery and JmolJSO
 full text support for HTML5-only option
 load performance enhanced using packaging of JavaScript classes
 binary file loading works in FF, MSIE, and Chrome
 threads working for hover, delay, animation, vibration, spin, moveto, timeout

To do:

 still no text for WebGL option

What's here:

The main test page is test2.htm.
test2.htm is a general test of the integration of JSmol with  JmolJSO

This Jmol page (when complete) should automatically switch to different modes
depending upon browser capabilities. However, right now I have it starting in HTML5 mode only.

When operational, it will use the signed Jmol applet, the unsigned Jmol applet
with server-side help, or <a href="jsmol.sourceforge.net">JSmol</a> using 
HTML5 when WebGL is not available (iPad/iPhone/Android).
JSmol implements <a href="java2script.sourceforge.net">Java2Script</a> 
to recreate the entire Jmol Java applet in JavaScript.

On the server side, it uses jmolcd2.php for 
delivering cross-domain models into the viewer. 

Credits:

Jmol code conversion to JavaScript by Bob Hanson. 
GLmol interface written by Takanori Nakane. 
Java2Script written by Zhou Renjian, et al.
Jzlib written by Atsuhiko Yamanaka.
Testing assistance by Duncan Blue, St. Olaf '17