General Astex Commands selection_command ::= | SELECT selection:selectedAtoms | APPEND selection:selectedAtoms | EXCLUDE selection:selectedAtoms | INVERT selection:selectedAtoms | DEFINE STRING:name selection:selectedAtoms | UNDEFINE STRING:name | EVALUATE selection:selectedAtoms molecule_command ::= WRITE arguments:args molecule_command ::= MOLECULE LAZY STRING:name STRING:file | MOLECULE LOAD STRING:name STRING:file | MOLECULE LOAD STRING:file | MOLECULE DISPLAY STRING:pattern on_off:action | MOLECULE STRING:pattern STRING:name on_off:value | MOLECULE DISPLAY STRING:pattern STRING:action | MOLECULE REMOVE STRING:pattern | MOLECULE RELOAD STRING:name STRING:file remove_command ::= REMOVE MOLECULE STRING:pattern | REMOVE OBJECT STRING:pattern map_command ::= MAP LOAD STRING:name STRING:file | MAP LOAD STRING:name STRING:file INTEGER:dataMode | MAP LOAD STRING:name STRING:file INTEGER:dataMode STRING:level | MAP LOAD STRING:name STRING:file INTEGER:dataMode number:level | MAP LOAD STRING:name STRING:file INTEGER:dataMode STRING:level STRING:doSurf | MAP LOAD STRING:name STRING:file INTEGER:dataMode number:level STRING:doSurf | MAP REMOVE STRING:name | MAP REPLACE STRING:name STRING:file | MAP REPLACE STRING:name STRING:file INTEGER:dataMode | MAP REPLACE STRING:name STRING:file INTEGER:dataMode STRING:level | MAP REPLACE STRING:name STRING:file INTEGER:dataMode number:level | MAP WRITE STRING:name STRING:fileName | MAP WRITE STRING:name STRING:fileName INTEGER:mode | MAP STRING:name CONTOUR INTEGER:contour number:value | MAP STRING:name CONTOUR INTEGER:contour STRING:onoff | MAP STRING:name CONTOUR INTEGER:contour COLOR STRING:c | MAP STRING:name CONTOUR INTEGER:contour SOLID on_off:value | MAP STRING:name CONTOUR INTEGER:contour LINEWIDTH number:w | MAP STRING:name CONTOUR INTEGER:contour TRANSPARENCY INTEGER:t | MAP STRING:name CLIP selection:selectedAtoms | MAP STRING:name CONTOUR INTEGER:contour on_off:onoff | MAP EXCLUDE STRING:parentMap STRING:newMap STRING:subMaps | MAP SEGMENT STRING:mapName STRING:segFile number:level | MAP DEFINE MOLECULE STRING:molName STRING:directory | MAP DEFINE STRING:mapName | MAP DEFINE STRING:mapName number:tolerance | MAP DEFINE ALL MOLECULE STRING:mapName STRING:molName STRING:directory | MAP STRING:mapName MOLECULE STRING:modelName STRING:level | MAP STRING:mapName MOLECULE STRING:modelName number:level | MAP STRING:mapName MOLECULE STRING:modelName ALL INTEGER:intervals | MAP STRING:mapName GRAPH INTEGER:intervals STRING:findMax | MAP STRING:mapName GRAPH INTEGER:intervals | MAP STRING:mapName STRING:level GRAPH | MAP STRING:mapName number:level GRAPH | MAP STRING:mapName VOLUME INTEGER:intervals STRING:doNeighbour | MAP STRING:mapName VOLUME STRING:level | MAP STRING:mapName VOLUME number:level | MAP STRING:mapName VOLUME VOLUME | MAP STRING:mapName STRING:vol VOLUME | MAP STRING:mapName number:vol VOLUME | MAP STRING:mapName PRINT | MAP STRING:mapName MATRIX number:x00 number:x01 number:x02 number:x03 number:x10 number:x11 number:x12 number:x13 number:x20 number:x21 number:x22 number:x23 | MAP STRING:name arguments:args mask_command ::= MASK LOAD STRING:mapName STRING:file | MASK WRITE STRING:mapName STRING:maskName STRING:file | MASK WRITE ALL STRING:mapName | MASK WRITE ALL STRING:mapName STRING:directory | MASK DEFINE ALL STRING:mapName STRING:molName | MASK DEFINE SELECT STRING:mapName STRING:label STRING:color number:tolerance | MASK DEFINE STRING:mapName STRING:label STRING:color number:threshold | MASK DEFINE STRING:mapName STRING:label STRING:color STRING:threshold | MASK INCREASE STRING:mapName STRING:maskName | MASK INCREASE STRING:mapName STRING:maskName INTEGER:times | MASK DECREASE STRING:mapName STRING:maskName | MASK REMOVE ALL STRING:mapName | MASK REMOVE STRING:mapName STRING:maskName | MASK COLOR STRING:mapName STRING:maskName STRING:color | MASK NAME STRING:mapName STRING:maskName STRING:newName | MASK RADIUS STRING:mapName STRING:maskName number:tolerance | MASK AND STRING:mapName STRING:mask1 STRING:mask2 STRING:mask3 | MASK OR STRING:mapName STRING:mask1 STRING:mask2 STRING:mask3 | MASK XOR STRING:mapName STRING:mask1 STRING:mask2 STRING:mask3 | MASK EXCLUDE STRING:mapName STRING:mask1 STRING:mask2 STRING:mask3 display_command ::= DISPLAY selection:selectedAtoms | DISPLAY render_style:mode selection:selectedAtoms | DISPLAY render_style:mode on_off:onoff selection:selectedAtoms | DISPLAY WIDE selection:selectedAtoms | CLIP number:c | CLIP number:c number:d | CLIP INCREASE number:c | CLIP DECREASE number:c | DOTSURFACE STRING:name INTEGER:n selection:selectedAtoms | VDW number:r selection:selectedAtoms | BALL_RADIUS number:r selection:selectedAtoms | STICK_RADIUS number:r selection:selectedAtoms | CYLINDER_RADIUS number:r selection:selectedAtoms | BOND_WIDTH INTEGER:iw selection:selectedAtoms | STICK_COLOR STRING:colour selection:selectedAtoms | CHARGE number:r selection:selectedAtoms | ATTRIBUTE:att STRING:transformSelectionType selection:selectedAtoms | ATTRIBUTE:att number:ux number:uy number:uz number:px number:py number:pz number:theta selection:selectedAtoms | ATTRIBUTE:att number:a11 number:a12 number:a13 number:a21 number:a22 number:a23 number:a31 number:a32 number:a33 selection:selectedAtoms | ATTRIBUTE:att number:rx number:ry number:rz selection:selectedAtoms | ATTRIBUTE:att number:r selection:selectedAtoms | SURFACE arguments:args STRING:name STRING:colour selection:selectedAtoms surface_command ::= ANASURFACE arguments:args STRING:name STRING:colour selection:selectedAtoms color_command ::= | COLOR_BY_RAINBOW selection:selectedAtoms | COLOR STRING:c selection:selectedAtoms | TRANSPARENCY INTEGER:n selection:selectedAtoms label_command ::= LABEL CLEAR selection:selectedAtoms | LABEL STRING:format selection:selectedAtoms center_command ::= CENTER selection:selectedAtoms | RADIUS number:x | CENTER number:x number:y number:z | CENTER MAP STRING:map_name | RADIUS MAP STRING:map_name number:zoom | RADIUS MAP STRING:map_name number:zoom STRING:level STRING:axis | RADIUS MAP STRING:map_name number:zoom number:level STRING:axis distance_command ::= DISTANCE selection:first TO selection:second | DISTANCE arguments:args | DISTANCE STRING:state pdbe_command ::= PDBE arguments:args selection:selectedAtoms | PDBE arguments:args view_command ::= VIEW arguments:args miscellaneous_command ::= SET STRING:name on_off:value | EDIT STRING:name STRING:value selection:selectedAtoms | DELETE selection:selectedAtoms | SET STRING:name STRING:value | SET STRING:name INTEGER:value | FETCH STRING:urlName number:x00 number:x01 number:x02 number:x03 number:x10 number:x11 number:x12 number:x13 number:x20 number:x21 number:x22 number:x23 number:x30 number:x31 number:x32 number:x33 | BACKGROUND TRANSPARENCY INTEGER:t | BACKGROUND STRING:colorName | PRINT STRING:output | RUN STRING:script | SLIDE arguments:args | STRING:s arguments:args | UPDATE arguments:args number_list:nl | WRITE VIEW CURRENT STRING:fileName | WRITE VIEW ALL STRING:fileName animation_command ::= ANIMATE arguments:args modelling_command ::= MODELLING arguments:args | FORCEFIELD arguments:args light_command ::= LIGHT INTEGER:n arguments:args hbond_command ::= HBOND arguments:args active_site_command ::= ACTIVE_SITE arguments:args skeleton_command ::= SKELETON arguments:args schematic_command ::= SECSTRUC arguments:args selection:selectedAtoms | SCHEMATIC arguments:args selection:selectedAtoms load_command ::= LOAD MOLECULE STRING:name STRING:file | LOAD MOLECULE STRING:file object_command ::= OBJECT REMOVE STRING:pattern | OBJECT LOAD STRING:name STRING:filename | OBJECT DISPLAY STRING:pattern on_off:state | OBJECT STRING:pattern DISPLAY on_off:state | OBJECT STRING:name BACKFACE on_off:state | OBJECT STRING:name TEXTURE STRING:texture | OBJECT STRING:name TEXTURE STRING:range number:value number:value2 | OBJECT STRING:name TEXTURE STRING:attribute number:value | OBJECT STRING:name TEXTURE DISTANCE STRING:uvspec selection:selectedAtoms | OBJECT STRING:name TEXTURE CURVATURE STRING:uvspec number:dmax selection:selectedAtoms | OBJECT STRING:name TEXTURE ELECTROSTATIC STRING:uvspec number:dmax selection:selectedAtoms | OBJECT STRING:name TEXTURE LIPOPHILICITY STRING:uvspec number:dmax selection:selectedAtoms | OBJECT STRING:name COLOR STRING:colorName | OBJECT STRING:name LINEWIDTH number:w | OBJECT STRING:name TRANSPARENCY INTEGER:t | OBJECT STRING:name CLIP STRING:uvSpec | OBJECT STRING:name COPYTO STRING:newname | OBJECT STRING:name TEXTURE RECTANGULAR | OBJECT STRING:name arguments:args | OBJECT WRITE STRING:name STRING:fileName | OBJECT WRITE MAP STRING:mapName STRING:fileName texture_command ::= TEXTURE LOAD STRING:name STRING:image | TEXTURE STRING:name SIMPLE | TEXTURE STRING:name LIPOPHILICITY | TEXTURE arguments:args | TEXTURE REMOVE STRING:name render_style ::= on_off ::= arguments ::= arg_list ::= arg:a | arg_list:h arg:a arg ::= ARG:a STRING:value | ARG:a INTEGER:i | ARG:a DOUBLE:d | ARG:a LCURLY selection:selectedAtoms RCURLY | ARG:a TRUE | ARG:a FALSE selection ::= selection_expression:mask selection_expression ::= statement:mask | LPAREN selection_expression:mask RPAREN | selection_expression:mask1 AND selection_expression:mask2 | selection_expression:mask1 OR selection_expression:mask2 | NOT selection_expression:mask | BYRESIDUE selection_expression:mask | BONDED selection_expression:mask | SPHERE number:r AROUND selection_expression:mask | CONTACT number:r selection_expression:mask | GRAPH selection_expression:mask | SPHERE number:r AROUND number:x number:y number:z statement ::= ID id_list:v | ATOM string_list:v | ELEMENT id_list:v | RESIDUE id_list:v | MODULO INTEGER:n | SEQUENTIAL id_list:v | INSERTION STRING:s | ALTCODE STRING:s | NAME string_list:v | CHAIN string_list:v | MOLECULE string_list:v | MOLEXACT string_list:v | ATTRIBUTE:a OPERATOR:o number:d | ID OPERATOR:o number:d | string_list:composites | COMPOSITE string_list:v | GROUP STRING:definition | PEEK INTEGER:i string_list ::= STRING:s | string_list:v STRING:s number ::= INTEGER:i | DOUBLE:d id_list ::= id:i | id_list:v id:i number_list ::= number:f | number_list:fa number:f id ::=