# Jmol.mnu Jmol version 14.1.8_dev_2014.01.28 2014-01-28 17:17: # Part I -- Menu Structure # ------------------------ @COLOR = black white red orange yellow green cyan blue indigo violet @AXESCOLOR = gray salmon maroon olive slateblue gold orchid popupMenu = FRAMESbyModelComputedMenu configurationComputedMenu - selectMenuText viewMenu renderMenu colorMenu - surfaceMenu FILEUNITMenu - sceneComputedMenu zoomMenu spinMenu VIBRATIONMenu spectraMenu FRAMESanimateMenu - measureMenu pickingMenu - showConsole JSConsole showMenu fileMenu computationMenu - languageComputedMenu aboutComputedMenu selectMenuText | Select ({0}) = hideNotSelectedCB showSelectionsCB - selectAll selectNone invertSelection - elementsComputedMenu SYMMETRYSelectComputedMenu - PDBproteinMenu PDBnucleicMenu PDBheteroMenu PDBcarboMenu PDBnoneOfTheAbove PDBproteinMenu | Protein = PDBaaResiduesComputedMenu - allProtein proteinBackbone proteinSideChains - polar nonpolar - positiveCharge negativeCharge noCharge PDBcarboMenu | Carbohydrate = PDBcarboResiduesComputedMenu - allCarbo PDBnucleicMenu | Nucleic = PDBnucleicResiduesComputedMenu - allNucleic nucleicBackbone nucleicBases - DNA RNA - atPairs auPairs gcPairs PDBheteroMenu | Hetero = PDBheteroComputedMenu - allHetero Solvent Water - Ligand exceptWater nonWaterSolvent viewMenu | View = new best front left right top bottom back renderMenu | Style = perspectiveDepthCB showBoundBoxCB showUNITCELLCB showAxesCB stereoMenu - renderSchemeMenu - atomMenu labelMenu bondMenu hbondMenu ssbondMenu - PDBstructureMenu [set_axes]Menu [set_boundbox]Menu [set_UNITCELL]Menu renderSchemeMenu | Scheme = renderCpkSpacefill renderBallAndStick renderSticks renderWireframe PDBrenderCartoonsOnly PDBrenderTraceOnly atomMenu | Atoms = showHydrogensCB - atomNone - atom15 atom20 atom25 atom50 atom75 atom100 bondMenu | Bonds = bondNone bondWireframe - bond100 bond150 bond200 bond250 bond300 hbondMenu | Hydrogen Bonds = hbondCalc hbondNone hbondWireframe - PDBhbondSidechain PDBhbondBackbone - hbond100 hbond150 hbond200 hbond250 hbond300 ssbondMenu | Disulfide Bonds = ssbondNone ssbondWireframe - PDBssbondSidechain PDBssbondBackbone - ssbond100 ssbond150 ssbond200 ssbond250 ssbond300 PDBstructureMenu | Structures = structureNone - backbone cartoon cartoonRockets ribbons rockets strands trace VIBRATIONvectorMenu | Vectors = vectorOff vectorOn vibScale20 vibScale05 vector3 vector005 vector01 - vectorScale02 vectorScale05 vectorScale1 vectorScale2 vectorScale5 stereoMenu | Stereographic = stereoNone stereoRedCyan stereoRedBlue stereoRedGreen stereoCrossEyed stereoWallEyed labelMenu | Labels = labelNone - labelSymbol labelName labelNumber - labelPositionMenu labelPositionMenu | Position Label on Atom = labelCentered labelUpperRight labelLowerRight labelUpperLeft labelLowerLeft colorMenu | Color = colorrasmolCB - [color_atoms]Menu [color_bonds]Menu [color_hbonds]Menu [color_ssbonds]Menu colorPDBStructuresMenu [color_isosurface]Menu - [color_labels]Menu [color_vectors]Menu - [color_axes]Menu [color_boundbox]Menu [color_UNITCELL]Menu [color_background]Menu [color_atoms]Menu | Atoms = schemeMenu - @COLOR - opaque translucent [color_bonds]Menu | Bonds = none - @COLOR - opaque translucent [color_hbonds]Menu | Hydrogen Bonds = none - @COLOR - opaque translucent [color_ssbonds]Menu | Disulfide Bonds = none - @COLOR - opaque translucent [color_labels]Menu | Labels = none - @COLOR - opaque translucent [color_vectors]Menu | Vectors = none - @COLOR - opaque translucent [color_backbone]Menu | Backbone = none - schemeMenu - @COLOR - opaque translucent [color_cartoon]sMenu | Cartoon = none - schemeMenu - @COLOR - opaque translucent [color_ribbon]sMenu | Ribbons = none - schemeMenu - @COLOR - opaque translucent [color_rockets]Menu | Rockets = none - schemeMenu - @COLOR - opaque translucent [color_strands]Menu | Strands = none - schemeMenu - @COLOR - opaque translucent [color_trace]Menu | Trace = none - schemeMenu - @COLOR - opaque translucent [color_background]Menu | Background = @COLOR [color_isosurface]Menu | Surfaces = @COLOR - opaque translucent [color_axes]Menu | Axes = @AXESCOLOR [color_boundbox]Menu | Boundbox = @AXESCOLOR [color_UNITCELL]Menu | Unit cell = @AXESCOLOR colorPDBStructuresMenu | Structures = [color_backbone]Menu [color_cartoon]sMenu [color_ribbon]sMenu [color_rockets]Menu [color_strands]Menu [color_trace]Menu schemeMenu | By Scheme = cpk - formalcharge partialcharge#CHARGE - altloc#PDB amino#PDB chain#PDB group#PDB molecule monomer#PDB shapely#PDB structure#PDB relativeTemperature#BFACTORS fixedTemperature#BFACTORS zoomMenu | Zoom = zoom50 zoom100 zoom150 zoom200 zoom400 zoom800 - zoomIn zoomOut spinMenu | Spin = spinOn spinOff - [set_spin_X]Menu [set_spin_Y]Menu [set_spin_Z]Menu - [set_spin_FPS]Menu VIBRATIONMenu | Vibration = vibrationOff vibrationOn vibration20 vibration05 VIBRATIONvectorMenu spectraMenu | Spectra = hnmrMenu cnmrMenu FRAMESanimateMenu | Animation = animModeMenu - play pause resume stop - nextframe prevframe rewind - playrev restart - FRAMESanimFpsMenu FRAMESanimFpsMenu | Set FPS = animfps5 animfps10 animfps20 animfps30 animfps50 measureMenu | Measurements = showMeasurementsCB - measureOff measureDistance measureAngle measureTorsion PDBmeasureSequence - measureDelete measureList - distanceNanometers distanceAngstroms distancePicometers pickingMenu | Set picking = pickOff pickCenter pickIdent pickLabel pickAtom pickMolecule pickElement PDBpickChain PDBpickGroup SYMMETRYpickSite pickSpin computationMenu | Computation = minimize modelkit showMenu | Show = showHistory showFile showFileHeader - showOrient showMeasure - showSpacegroup showState SYMMETRYshowSymmetry UNITCELLshow - showIsosurface showMo - extractMOL fileMenu | File = SIGNEDloadFile SIGNEDloadUrl SIGNEDloadPdb SIGNEDloadScript - reload SIGNEDloadFileUnitCell - writeFileTextVARIABLE writeState writeHistory SIGNEDwriteJmol SIGNEDwriteIsosurface - SIGNEDJAVAcaptureMenuSPECIAL - SIGNEDJAVAwriteGif SIGNEDNOGLwriteJpg SIGNEDNOGLwritePng SIGNEDNOGLwritePngJmol SIGNEDJAVAwritePovray - SIGNEDJAVAwriteVrml SIGNEDJAVAwriteX3d SIGNEDJAVAwriteIdtf SIGNEDJAVAwriteMaya SIGNEDJAVAcaptureMenuSPECIAL | Capture = SIGNEDJAVAcaptureRock SIGNEDJAVAcaptureSpin - SIGNEDJAVAcaptureBegin SIGNEDJAVAcaptureEnd SIGNEDJAVAcaptureOff SIGNEDJAVAcaptureOn SIGNEDJAVAcaptureFpsSPECIAL SIGNEDJAVAcaptureLoopingSPECIAL [set_spin_X]Menu | Set X Rate = s0 s5 s10 s20 s30 s40 s50 [set_spin_Y]Menu | Set Y Rate = s0 s5 s10 s20 s30 s40 s50 [set_spin_Z]Menu | Set Z Rate = s0 s5 s10 s20 s30 s40 s50 [set_spin_FPS]Menu | Set FPS = s0 s5 s10 s20 s30 s40 s50 animModeMenu | Animation Mode = onceThrough palindrome loop surfaceMenu | Surfaces = surfDots surfVDW surfSolventAccessible14 surfSolvent14 surfMolecular CHARGEsurf2MEP CHARGEsurfMEP surfMoComputedMenuText - surfOpaque surfTranslucent surfOff FILEUNITMenu | Symmetry = SYMMETRYShowComputedMenu SYMMETRYhide FILEMOLload FILEUNITone FILEUNITnine FILEUNITnineRestricted FILEUNITninePoly [set_axes]Menu | Axes = off#axes dotted - byPixelMenu byAngstromMenu [set_boundbox]Menu | Boundbox = off#axes dotted - byPixelMenu byAngstromMenu [set_UNITCELL]Menu | Unit cell = off#axes dotted - byPixelMenu byAngstromMenu byPixelMenu | Pixel Width = 1p 3p 5p 10p byAngstromMenu | Angstrom Width = 10a 20a 25a 50a 100a aboutComputedMenu | About... = - # Part II -- Key Definitions # -------------------------- colorrasmolCB | RasMol Colors = hideNotSelectedCB | Display Selected Only = set hideNotSelected true | set hideNotSelected false; hide(none) perspectiveDepthCB | Perspective Depth = showAxesCB | Axes = set showAxes true | set showAxes false;set axesMolecular showBoundBoxCB | Boundbox = showHydrogensCB | Show Hydrogens = showMeasurementsCB | Show Measurements = showSelectionsCB | Selection Halos = showUNITCELLCB | Unit cell = selectAll | All = SELECT all selectNone | None = SELECT none invertSelection | Invert Selection = SELECT not selected allProtein | All = SELECT protein proteinBackbone | Backbone = SELECT protein and backbone proteinSideChains | Side Chains = SELECT protein and not backbone polar | Polar Residues = SELECT protein and polar nonpolar | Nonpolar Residues = SELECT protein and not polar positiveCharge | Basic Residues (+) = SELECT protein and basic negativeCharge | Acidic Residues (-) = SELECT protein and acidic noCharge | Uncharged Residues = SELECT protein and not (acidic,basic) allCarbo | All = SELECT carbohydrate allNucleic | All = SELECT nucleic DNA | DNA = SELECT dna RNA | RNA = SELECT rna nucleicBackbone | Backbone = SELECT nucleic and backbone nucleicBases | Bases = SELECT nucleic and not backbone atPairs | AT pairs = SELECT a,t gcPairs | GC pairs = SELECT g,c auPairs | AU pairs = SELECT a,u A = SELECT a C = SELECT c G = SELECT g T = SELECT t U = SELECT u allHetero | All PDB "HETATM" = SELECT hetero Solvent | All Solvent = SELECT solvent Water | All Water = SELECT water nonWaterSolvent | Nonaqueous Solvent (solvent and not water) = SELECT solvent and not water exceptWater | Nonaqueous HETATM (hetero and not water) = SELECT hetero and not water Ligand | Ligand = SELECT ligand PDBnoneOfTheAbove | None of the above = SELECT not(hetero,protein,nucleic,carbohydrate) new | New = rotate x 30 best | Best = rotate best -1.0 front | Front = if (showBoundBox or showUnitcell) {moveto 2.0 front;delay 1} else {boundbox on;moveto 2.0 front;delay 1;boundbox off} left | Left = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 left;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 left;delay 1;boundbox off} right | Right = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 right;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 right;delay 1;boundbox off} top | Top = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 top;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 top;delay 1;boundbox off} bottom | Bottom = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 bottom;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 bottom;delay 1;boundbox off} back | Back = if (showBoundBox or showUnitcell) {moveto 1.0 front;moveto 2.0 back;delay 1} else {boundbox on;moveto 1.0 front;moveto 2.0 back;delay 1;boundbox off} renderCpkSpacefill | CPK Spacefill = restrict bonds not selected;select not selected;spacefill 100%;color cpk renderBallAndStick | Ball and Stick = restrict bonds not selected;select not selected;spacefill 23%AUTO;wireframe 0.15;color cpk renderSticks | Sticks = restrict bonds not selected;select not selected;wireframe 0.3;color cpk renderWireframe | Wireframe = restrict bonds not selected;select not selected;wireframe on;color cpk PDBrenderCartoonsOnly | Cartoon = restrict bonds not selected;select not selected;cartoons on;color structure PDBrenderTraceOnly | Trace = restrict bonds not selected;select not selected;trace on;color structure atomNone | Off = cpk off atom15 | 15% van der Waals = cpk 15% atom20 | 20% van der Waals = cpk 20% atom25 | 25% van der Waals = cpk 25% atom50 | 50% van der Waals = cpk 50% atom75 | 75% van der Waals = cpk 75% atom100 | 100% van der Waals = cpk on bondNone | Off = wireframe off bondWireframe | On = wireframe on bond100 | 0.10 Å = wireframe .1 bond150 | 0.15 Å = wireframe .15 bond200 | 0.20 Å = wireframe .2 bond250 | 0.25 Å = wireframe .25 bond300 | 0.30 Å = wireframe .3 hbondCalc | Calculate = hbonds calculate hbondNone | Off = hbonds off hbondWireframe | On = hbonds on PDBhbondSidechain | Set H-Bonds Side Chain = set hbonds sidechain PDBhbondBackbone | Set H-Bonds Backbone = set hbonds backbone hbond100 | 0.10 Å = hbonds .1 hbond150 | 0.15 Å = hbonds .15 hbond200 | 0.20 Å = hbonds .2 hbond250 | 0.25 Å = hbonds .25 hbond300 | 0.30 Å = hbonds .3 ssbondNone | Off = ssbonds off ssbondWireframe | On = ssbonds on PDBssbondSidechain | Set SS-Bonds Side Chain = set ssbonds sidechain PDBssbondBackbone | Set SS-Bonds Backbone = set ssbonds backbone ssbond100 | 0.10 Å = ssbonds .1 ssbond150 | 0.15 Å = ssbonds .15 ssbond200 | 0.20 Å = ssbonds .2 ssbond250 | 0.25 Å = ssbonds .25 ssbond300 | 0.30 Å = ssbonds .3 structureNone | Off = backbone off;cartoons off;ribbons off;rockets off;strands off;trace off; backbone | Backbone = restrict not selected;select not selected;backbone 0.3 cartoon | Cartoon = restrict not selected;select not selected;set cartoonRockets false;cartoons on cartoonRockets | Cartoon Rockets = restrict not selected;select not selected;set cartoonRockets;cartoons on ribbons | Ribbons = restrict not selected;select not selected;ribbons on rockets | Rockets = restrict not selected;select not selected;rockets on strands | Strands = restrict not selected;select not selected;strands on trace | Trace = restrict not selected;select not selected;trace 0.3 vibrationOff | Off = vibration off vibrationOn | On = vibration on vibration20 | *2 = vibrationScale *= 2 vibration05 | /2 = vibrationScale /= 2 vectorOff | Off = vectors off vectorOn | On = vectors on vector3 | 3 pixels = vectors 3 vector005 | 0.05 Å = vectors 0.05 vector01 | 0.10 Å = vectors 0.1 vectorScale02 | Scale 0.2 = vector scale 0.2 vectorScale05 | Scale 0.5 = vector scale 0.5 vectorScale1 | Scale 1 = vector scale 1 vectorScale2 | Scale 2 = vector scale 2 vectorScale5 | Scale 5 = vector scale 5 stereoNone | None = stereo off stereoRedCyan | Red+Cyan glasses = stereo redcyan 3 stereoRedBlue | Red+Blue glasses = stereo redblue 3 stereoRedGreen | Red+Green glasses = stereo redgreen 3 stereoCrossEyed | Cross-eyed viewing = stereo -5 stereoWallEyed | Wall-eyed viewing = stereo 5 labelNone | None = label off labelSymbol | With Element Symbol = label %e labelName | With Atom Name = label %a labelNumber | With Atom Number = label %i labelCentered | Centered = set labeloffset 0 0 labelUpperRight | Upper Right = set labeloffset 4 4 labelLowerRight | Lower Right = set labeloffset 4 -4 labelUpperLeft | Upper Left = set labeloffset -4 4 labelLowerLeft | Lower Left = set labeloffset -4 -4 zoom50 | 50% = zoom 50 zoom100 | 100% = zoom 100 zoom150 | 150% = zoom 150 zoom200 | 200% = zoom 200 zoom400 | 400% = zoom 400 zoom800 | 800% = zoom 800 zoomIn | Zoom In = move 0 0 0 40 0 0 0 0 1 zoomOut | Zoom Out = move 0 0 0 -40 0 0 0 0 1 spinOn | On = spin on spinOff | Off = spin off s0 | 0 = 0 s5 | 5 = 5 s10 | 10 = 10 s20 | 20 = 20 s30 | 30 = 30 s40 | 40 = 40 s50 | 50 = 50 onceThrough | Play Once = anim mode once# palindrome | Palindrome = anim mode palindrome# loop | Loop = anim mode loop# play | Play = anim play# pause | Pause = anim pause# resume | Resume = anim resume# stop | Stop = anim off# nextframe | Next Frame = frame next# prevframe | Previous Frame = frame prev# playrev | Reverse = anim playrev# rewind | Rewind = anim rewind# restart | Restart = anim on# animfps5 | 5 = anim fps 5# animfps10 | 10 = anim fps 10# animfps20 | 20 = anim fps 20# animfps30 | 30 = anim fps 30# animfps50 | 50 = anim fps 50# measureOff | Double-Click begins and ends all measurements = set pickingstyle MEASURE OFF; set picking OFF measureDistance | Click for distance measurement = set pickingstyle MEASURE; set picking MEASURE DISTANCE measureAngle | Click for angle measurement = set pickingstyle MEASURE; set picking MEASURE ANGLE measureTorsion | Click for torsion (dihedral) measurement = set pickingstyle MEASURE; set picking MEASURE TORSION PDBmeasureSequence | Click two atoms to display a sequence in the console = set pickingstyle MEASURE; set picking MEASURE SEQUENCE measureDelete | Delete measurements = measure delete measureList | List measurements = console on;show measurements distanceNanometers | Distance units nanometers = select *; set measure nanometers distanceAngstroms | Distance units Angstroms = select *; set measure angstroms distancePicometers | Distance units picometers = select *; set measure picometers pickOff | Off = set picking off pickCenter | Center = set picking center pickIdent | Identity = set picking ident pickLabel | Label = set picking label pickAtom | Select atom = set picking atom PDBpickChain | Select chain = set picking chain pickElement | Select element = set picking element PDBpickGroup | Select group = set picking group pickMolecule | Select molecule = set picking molecule SYMMETRYpickSite | Select site = set picking site pickSpin | Spin = set picking spin SYMMETRYpickSymmetry | Show symmetry operation = set picking symmetry showConsole | Console = console JSConsole | JavaScript Console = JSCONSOLE showFile | File Contents = console on;show file showFileHeader | File Header = console on;getProperty FileHeader showHistory | History = console on;show history showIsosurface | Isosurface JVXL data = console on;show isosurface showMeasure | Measurements = console on;show measure showMo | Molecular orbital JVXL data = console on;show mo showModel | Model = console on;show model showOrient | Orientation = console on;show orientation showSpacegroup | Space group = console on;show spacegroup showState | Current state = console on;show state reload | Reload = load "" SIGNEDloadPdb | Open from PDB = load ?PdbId? SIGNEDloadFile | Open local file = load ? SIGNEDloadUrl | Open URL = load http://? SIGNEDloadFileUnitCell | Load full unit cell = load ? {1 1 1} SIGNEDloadScript | Open script = script ?.spt SIGNEDJAVAcaptureRock | Capture rock = animation mode loop;capture '?Jmol.gif' rock y 10 SIGNEDJAVAcaptureSpin | Capture spin = animation mode loop;capture '?Jmol.gif' spin y SIGNEDJAVAcaptureBegin | Start capturing = capture '?Jmol.gif' SIGNEDJAVAcaptureEnd | End capturing = capture '' SIGNEDJAVAcaptureOff | Disable capturing = capture off SIGNEDJAVAcaptureOn | Re-enable capturing = capture on SIGNEDJAVAcaptureFpsSPECIAL | Set capture replay rate = animation fps @{0+prompt('Capture replay frames per second?', animationFPS)};prompt 'animation FPS ' + animationFPS SIGNEDJAVAcaptureLoopingSPECIAL | Toggle capture looping = animation mode @{(animationMode=='ONCE' ? 'LOOP':'ONCE')};prompt 'animation MODE ' + animationMode writeFileTextVARIABLE | Save a copy of {0} = if (_applet && !_signedApplet) { console;show file } else { write file "?FILE?"} writeState | Save script with state = if (_applet && !_signedApplet) { console;show state } else { write state "?FILEROOT?.spt"} writeHistory | Save script with history = if (_applet && !_signedApplet) { console;show history } else { write history "?FILEROOT?.his"} SIGNEDwriteJmol | Save all as JMOL file (zip) = write "?FILEROOT?.jmol" SIGNEDwriteIsosurface | Save JVXL isosurface = write isosurface "?FILEROOT?.jvxl" SIGNEDJAVAwriteGif | Export GIF image = write image "?FILEROOT?.gif" SIGNEDNOGLwriteJpg | Export JPG image = write image "?FILEROOT?.jpg" SIGNEDNOGLwritePng | Export PNG image = write image "?FILEROOT?.png" SIGNEDNOGLwritePngJmol | Export PNG+JMOL image = write PNGJ "?FILEROOT?.png" SIGNEDJAVAwritePovray | Export POV-Ray image = write POVRAY "?FILEROOT?.pov" SIGNEDJAVAwriteVrml | Export VRML 3D model = write VRML "?FILEROOT?.wrl" SIGNEDJAVAwriteX3d | Export X3D 3D model = write X3D "?FILEROOT?.x3d" SIGNEDJAVAwriteIdtf | Export IDTF 3D model = write IDTF "?FILEROOT?.idtf" SIGNEDJAVAwriteMaya | Export Maya 3D model = write MAYA "?FILEROOT?.ma" SYMMETRYshowSymmetry | Symmetry = console on;show symmetry UNITCELLshow | Unit cell = console on;show unitcell extractMOL | Extract MOL data = console on;getproperty extractModel "visible" minimize | Optimize structure = minimize modelkit | Model kit = set modelkitmode surfDots | Dot Surface = dots on surfVDW | van der Waals Surface = isosurface delete resolution 0 solvent 0 translucent surfMolecular | Molecular Surface = isosurface delete resolution 0 molecular translucent surfSolvent14 | Solvent Surface (1.4-Angstrom probe) = isosurface delete resolution 0 solvent 1.4 translucent surfSolventAccessible14 | Solvent-Accessible Surface (VDW + 1.4 Angstrom) = isosurface delete resolution 0 sasurface 1.4 translucent CHARGEsurfMEP | Molecular Electrostatic Potential (range ALL) = isosurface delete resolution 0 vdw color range all map MEP translucent CHARGEsurf2MEP | Molecular Electrostatic Potential (range -0.1 0.1) = isosurface delete resolution 0 vdw color range -0.1 0.1 map MEP translucent surfOpaque | Make Opaque = mo opaque;isosurface opaque surfTranslucent | Make Translucent = mo translucent;isosurface translucent surfOff | Off = mo delete;isosurface delete;select *;dots off SYMMETRYhide | Hide Symmetry = draw sym_* delete FILEMOLload | Reload (molecular) = save orientation;load "";restore orientation;center FILEUNITone | Reload {1 1 1} = save orientation;load "" {1 1 1} ;restore orientation;center FILEUNITnine | Reload {444 666 1} = save orientation;load "" {444 666 1} ;restore orientation;center FILEUNITnineRestricted | Reload {444 666 1} + Display 555 = save orientation;load "" {444 666 1} ;restore orientation; unitcell on; display cell=555;center visible;zoom 200 FILEUNITninePoly | Reload + Polyhedra = save orientation;load "" {444 666 1} ;restore orientation; unitcell on; display cell=555; polyhedra 4,6 (displayed);center (visible);zoom 200 1p | 1 px = on 3p | 3 px = 3 5p | 5 px = 5 10p | 10 px = 10 10a | 0.10 Å = 0.1 20a | 0.20 Å = 0.20 25a | 0.25 Å = 0.25 50a | 0.50 Å = 0.50 100a | 1.0 Å = 1.0 # Part III -- Word Translations # ----------------------------- modelSetMenu | No atoms loaded configurationComputedMenu | Configurations elementsComputedMenu | Element FRAMESbyModelComputedMenu | Model/Frame languageComputedMenu | Language PDBaaResiduesComputedMenu | By Residue Name PDBnucleicResiduesComputedMenu | By Residue Name PDBcarboResiduesComputedMenu | By Residue Name PDBheteroComputedMenu | By HETATM surfMoComputedMenuText | Molecular Orbitals ({0}) SYMMETRYSelectComputedMenu | Symmetry SYMMETRYShowComputedMenu | Space Group hiddenModelSetText | Model information allModelsText | All {0} models configurationMenuText | Configurations ({0}) modelSetCollectionText | Collection of {0} models atomsText | atoms: {0} bondsText | bonds: {0} groupsText | groups: {0} chainsText | chains: {0} polymersText | polymers: {0} modelMenuText | model {0} viewMenuText | View {0} mainMenuText | Main Menu biomoleculesMenuText | Biomolecules biomoleculeText | biomolecule {0} ({1} atoms) loadBiomoleculeText | load biomolecule {0} ({1} atoms) sceneComputedMenu | Scenes hnmrMenu | 1H-NMR cnmrMenu | 13C-NMR cpk | Element (CPK) altloc#PDB | Alternative Location molecule | Molecule formalcharge | Formal Charge partialcharge#CHARGE | Partial Charge relativeTemperature#BFACTORS | Temperature (Relative) fixedTemperature#BFACTORS | Temperature (Fixed) amino#PDB | Amino Acid structure#PDB | Secondary Structure chain#PDB | Chain group#PDB | Group monomer#PDB | Monomer shapely#PDB | Shapely none | Inherit black | Black white | White cyan | Cyan red | Red orange | Orange yellow | Yellow green | Green blue | Blue indigo | Indigo violet | Violet salmon | Salmon olive | Olive maroon | Maroon gray | Gray slateblue | Slate Blue gold | Gold orchid | Orchid opaque | Make Opaque translucent | Make Translucent off#axes | Hide dotted | Dotted APPLETjmolUrl | http://www.jmol.org APPLETmouseManualUrl | Mouse Manual APPLETtranslationUrl | Translations