Jmol Interactive Examples

Click on a link below to see what it does.
You can also type a command in the box below the model to see its effect. The model used in this case is [1blu]. In each case, the following default script is run first: labels off;font label 12;restrict within (5.0,*.Fe?)

Several special characters starting with "%" allow for a variety of information to be displayed.

select *.Fe3;label "atom %i: %a %e"
select [CYS]37.SG;label "residue %r"
select [CYS]37.SG;label "[%n]%r.%a B-factor=%b"
select [CYS]49.SG;label "%U occupancy=%q%"
select *.Fe3;label "coord=%x %y %z"
select *.Fe3;label "bonding radius=%I"
select *.Fe3;label "VDW radius=%V"
select *.Fe3;label "formal charge=%C part. charge=%P"
select [LEU]*.C? and selected;label "%a %r polymer len=%L";spacefill 1.0
select [TYR]30.CG and selected;label "%a model ID=%M"#useful if more than one model

Note that label fonts of can be changed:

select *.Fe3;label "%i: %a %e";font label 16
select *.Fe3;label "%i: %a %e";font label 20 serif bold;

and that this change is based on the current selection:

select atomno=616;color label yellow; select atomno=624 or atomno=616;labels on

file cmd: popup

functions on this page:

Jmol Examples: LABEL