These predefined sets also work with the "restrict" and "define" commands. See also select.htm
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groups --------------------------- ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL ASX GLX UNK A +A G +G I +I C +C T +T U +U 1MA AMO 5MC OMC 1MG 2MG M2G 7MG G7M OMG YG QUO H2U 5MU 4SU PSU AMP ADP ATP GMP GDP GTP IMP IDP ITP CMP CDP CTP TMP TDP TTP UMP UDP UTP HOH DOD WAT PO4 SO4
protein related --------------------------- protein amino acidic basic charged negative positive neutral polar cyclic acyclic aliphatic aromatic buried surface hydrophobic ligand mainchain small medium large
nucleic acid related --------------------------- nucleic dna rna purine pyrimidine c g cg a t at i u tu
solvent related --------------------------- solvent hoh water ions
structure related --------------------------- alpha backbone sidechain base turn sheet helix bonded hetero
file cmd: popup functions on this page:$()_jmolApplet()_jmolFixDim()_jmolGetAppletSize()_jmolGetJarFilename()adddef()doinit()dowritenew()fixlinks()getPreDefined()getapplet()getinfo()getpage()getremark()getscriptlink()getscripts()gettitle()gettitleinfo()idof()jQuery()jmolAppendInlineArray()jmolAppendInlineScript()jmolApplet()jmolAppletAddParam()jmolAppletInline()jmolBr()jmolButton()jmolCheckBrowser()jmolCheckbox()jmolCommandInput()jmolDebugAlert()jmolEvaluate()jmolFindTarget()jmolGetPropertyAsArray()jmolGetPropertyAsJSON()jmolGetPropertyAsJavaObject()jmolGetPropertyAsString()jmolGetStatus()jmolHtml()jmolInitialize()jmolLink()jmolLoadInline()jmolLoadInlineArray()jmolLoadInlineScript()jmolMenu()jmolRadio()jmolRadioGroup()jmolResizeApplet()jmolRestoreOrientation()jmolRestoreOrientationDelayed()jmolSaveOrientation()jmolScript()jmolScriptEcho()jmolScriptMessage()jmolScriptWait()jmolScriptWaitAsArray()jmolScriptWaitOutput()jmolSetAppletColor()jmolSetAppletCssClass()jmolSetAppletWindow()jmolSetButtonCssClass()jmolSetCallback()jmolSetCheckboxCssClass()jmolSetDocument()jmolSetLinkCssClass()jmolSetLogLevel()jmolSetMemoryMb()jmolSetMenuCssClass()jmolSetParameter()jmolSetRadioCssClass()jmolSetSyncId()jmolSetTarget()jmolSetTranslation()jmolSetXHTML()onload()showcmd()showdefs()showfile()showfunction()showmsg()showmsgbox()showpage()showpageDOM()showref()showscript()showthedef()showthefile()usercallback()
