jmol1 is ready

loading... j2s/core/package.js

loading... j2s/core/core.z.js -- required by ClazzNode

loading... j2s/J/modelset/Bond/BondSet.js

loading... j2s/core/corebinary.z.js

loading... j2s/core/coreconsole.z.js

loading... j2s/javajs/api/ZInputStream.js

loading... j2s/J/util/ModulationSet.js

loading... j2s/J/modelset/Bond/BondSet.js -- required by w3c script failed

Jmol JavaScript applet jmol1_object__929358704291825__ initializing

getValue debug = null

getValue logLevel = null

getValue allowjavascript = null

AppletRegistry.checkIn(jmol1_object__929358704291825__)

viewerOptions:

{ "name":"jmol1_object","applet":true,"documentBase":"https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/cover.htm","platform":"J.awtjs2d.Platform","fullName":"jmol1_object__929358704291825__","display":"jmol1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol.MyStatusListener object]","codeBase":"https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/j2s/","syncId":"929358704291825","bgcolor":"white" }

setting document base to "https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/cover.htm"

Jmol Version: 13.3.9 2013-11-22 09:07:

java.vendor: j2s

java.version: 0.0

os.name: j2s

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmol1_object (signed)

starting HoverWatcher_1

getValue emulate = null

defaults = "Jmol"

getValue boxbgcolor = null

getValue bgcolor = white

backgroundColor = "white"

getValue ANIMFRAMECallback = null

getValue APPLETREADYCallback = Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

getValue ATOMMOVEDCallback = null

getValue CLICKCallback = null

getValue ECHOCallback = null

getValue ERRORCallback = null

getValue EVALCallback = null

getValue HOVERCallback = null

getValue LOADSTRUCTCallback = null

getValue MEASURECallback = null

getValue MESSAGECallback = null

getValue MINIMIZATIONCallback = null

getValue PICKCallback = null

getValue RESIZECallback = null

getValue SCRIPTCallback = null

getValue SYNCCallback = null

getValue STRUCTUREMODIFIEDCallback = null

getValue doTranslate = null

language=en_US

getValue popupMenu = null

getValue script = null

Jmol applet jmol1_object__929358704291825__ ready

loading... j2s/core/corescript.z.js

loading... j2s/J/api/JmolParallelProcessor.js

starting QueueThread0_2

script 1 started

loading... j2s/core/corezip.z.js

FileManager opening 1 https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png

FileManager checking PNGJ cache for https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|JmolManifest.txt

ZipUtil cached 59230 bytes from https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png

https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|Jmol_version_13.0.7_dev__2012-10-12_22.06

https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png

https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|JmolManifest.txt

https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|state.spt

https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|1hxw.pdb.gz

FileManager opening 3 https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|JmolManifest.txt

FileManager checking PNGJ cache for https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|JmolManifest.txt

FileManager using memory cache https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|JmolManifest.txt

FileManager checking PNGJ cache for https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|state.spt

FileManager using memory cache https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|state.spt

loading... j2s/core/corestate.z.js

FileManager.getAtomSetCollectionFromFile(https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|1hxw.pdb.gz)

starting HoverWatcher_3

FileManager checking PNGJ cache for https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|1hxw.pdb.gz

FileManager using memory cache https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|1hxw.pdb.gz

The Resolver thinks Pdb

loading... j2s/core/corebio.z.js

loading... j2s/J/api/DSSPInterface.js -- required by J.dssx.DSSP

loading... j2s/J/render/MeshRenderer.js -- required by J.renderbio.BioShapeRenderer

loading... j2s/J/shape/Mesh.js

loading... j2s/J/util/Hermite.js

HYDROLASE/HYDROLASE INHIBITOR 24-JAN-97 1HXW

HIV-1 PROTEASE DIMER COMPLEXED WITH A-84538

loading... j2s/core/coresym.z.js

found biomolecule 1: A, B

biomolecule 1: number of transforms: 1

Time for openFile(https://chemapps.stolaf.edu/jmol/jsmol-2013-11-25/data/1hxw.png|1hxw.pdb.gz): 495 ms

reading 2202 atoms

ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

2202 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

loading... j2s/core/corescript2.z.js

loading... j2s/core/coretext.z.js

loading... j2s/J/shape/Measures.js

loading... j2s/J/shapesurface/Contact.js

loading... j2s/core/coresurface.z.js -- required by J.shapesurface.Contact

loading... j2s/J/shape/MeshCollection.js -- required by J.shapesurface.Isosurface

loading... j2s/J/util/TriangleData.js -- required by J.jvxl.calc.MarchingCubes

loading... j2s/J/api/Triangulator.js -- required by J.util.TriangleData

loading... j2s/J/constant/EnumHBondType.js

loading... j2s/J/util/ContactPair.js

contact ID "contact1" ({1852:1901}) hbond;

Contact pairs: 17

loading... j2s/J/jvxl/readers/IsoIntersectReader.js

10 contacts with net volume 5.004599623945453 A^3

contact ID "contact1" fill noMesh noDots notFrontOnly fullylit;

loading... j2s/J/shape/Bbcage.js

loading... j2s/J/shape/Uccage.js

loading... j2s/J/navigate/Navigator.js

loading... j2s/J/api/JmolNavigatorInterface.js -- required by J.navigate.Navigator

1938 atoms hidden

loading... j2s/J/render/MeasuresRenderer.js

loading... j2s/J/rendersurface/ContactRenderer.js

loading... j2s/J/render/BbcageRenderer.js

loading... j2s/J/render/CageRenderer.js -- required by J.render.BbcageRenderer

loading... j2s/J/render/UccageRenderer.js