 Jmol._Canvas2D (Jmol) "jmolApplet0"[x] loadScript j2s/core/package.js loadScript j2s/core/corejmol.z.js loadScript j2s/J/translation/PO.js loadScript j2s/core/corescript.z.js JSmol exec jmolApplet0 start applet null Jmol JavaScript applet jmolApplet0__7333480593157646__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet0__7333480593157646__) vwrOptions: { "appletReadyCallback":"Jmol._readyCallback","applet":true,"name":"jmolApplet0","syncId":"7333480593157646","bgcolor":"#FFFFFF","signedApplet":"true","platform":"J.awtjs2d.Platform","display":"jmolApplet0_canvas2d","documentBase":"https://chemapps.stolaf.edu/jmol/jsmol/jmol-flot.htm","codePath":"https://chemapps.stolaf.edu/jmol/jsmol/j2s/","fullName":"jmolApplet0__7333480593157646__","statusListener":"[J.appletjs.Jmol object]" } setting document base to "https://chemapps.stolaf.edu/jmol/jsmol/jmol-flot.htm" (C) 2015 Jmol Development Jmol Version: 16.2.31 2024-09-14 12:17 java.vendor: Java2Script (HTML5) java.version: 2022-06-24 05:54:49 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet0 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #FFFFFF backgroundColor = "#FFFFFF" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" StatusManager APPLETREADYcallback set f=Jmol._readyCallback Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue MODELKITCallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SELECTCallback null Jmol getValue SERVICECallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue SYNCCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet0__7333480593157646__ ready script 1 started StatusManager ANIMFRAMEcallback set f=jmolscript:select model=_modelNumber animframecallback = "jmolscript:select model=_modelNumber" zoomLarge = false loadScript j2s/core/coretext.z.js loading 1crn... FileManager.getAtomSetCollectionFromFile(https://files.rcsb.org/download/1crn.pdb) FileManager opening url https://files.rcsb.org/download/1crn.pdb The Resolver thinks Pdb loadScript j2s/core/corebio.z.js PLANT PROTEIN 30-APR-81 1CRN WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS OF CRAMBIN found biomolecule 1: A biomolecule 1: number of transforms: 1 Setting space group name to P 1 21 1 1CRN Time for openFile(https://files.rcsb.org/download/1crn.pdb): 1740 ms reading 327 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Jmol 327 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Time for creating model: 28 ms PLANT PROTEIN 30-APR-81 1CRN WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS OF CRAMBIN found biomolecule 1: A 1CRN 1crn StatusManager LOADSTRUCTcallback set f=jmolLoadStructCallback loadStructCallback = "jmolLoadStructCallback" defaultLoadScript = "cartoon only;color structure;set bondmode OR;isDssp = false;" Script completed Jmol script terminated |
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Plot 2: Ramachandran Plot print show: data(JSON) data(TAB) axes options | ||
| This page and jmol-flot-energy.htm illustrate how the Flot graphing package can be used with Jmol to depict molecular data graphically. The Flot package is quite flexible and very easy to work with. For these pages I've adapted it a bit -- the modified flot JavaScript file is in the flot subdirectory. Mostly I added a hover delay option and the option to hover over a vertical or horizontal slice rather than exactly on a point. For the Ramachandran Plot, I added the option to have major tick marks drawn in a darker color. | |||