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(C) 2015 Jmol Development
Jmol Version: 16.2.31 2024-09-14 12:17
java.vendor: Java2Script (HTML5)
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FileManager.getAtomSetCollectionFromFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb)
FileManager opening url https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb
The Resolver thinks Pdb
PLANT SEED PROTEIN 30-APR-81 1CRN
WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC
RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS
OF CRAMBIN
found biomolecule 1: A
biomolecule 1: number of transforms: 1
Setting space group name to P 1 21 1
1CRN
Time for openFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb): 775 ms
reading 327 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
327 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 25 ms
PLANT SEED PROTEIN 30-APR-81 1CRN
WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC
RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS
OF CRAMBIN
found biomolecule 1: A
1CRN
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Jmol 16.2.31 2024-09-14 12:17 DSSP analysis for model 1.1 - 1CRN
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer in Java for our purposes.
Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841.
All bioshapes have been deleted and must be regenerated.
------------------------------
65.1.8:
65.1.7: 1 2 3 4
65.1.6: 1234567890123456789012345678901234567890123456
65.1.5: ...............>5555<.........................
65.1.4: .....>>>>XXXXX<<<<...>>>>XX<<<<...............
65.1.3: ..............>3><3<.>33<...............>>3<<.
65.1.1: .EE...HHHHHHHHHHHTTT..HHHHHHHH..EE.......GGG..
65.1.0: TTCCPSIVARSNFNVCRLPGTPEAICATYTGCIIIPGATCPGDYAN
SUMMARY:
E : A:2_A:3
H : A:7_A:17
T : A:18_A:20
H : A:23_A:30
E : A:33_A:34
G : A:42_A:44
Script completed
Jmol script terminated
PLANT SEED PROTEIN 30-APR-81 1CRN
WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC
RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS
OF CRAMBIN
found biomolecule 1: A
biomolecule 1: number of transforms: 1
Setting space group name to P 1 21 1
1CRN
Time for openFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb): 2704 ms
reading 327 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
327 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 14 ms
PLANT SEED PROTEIN 30-APR-81 1CRN
WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC
RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS
OF CRAMBIN
found biomolecule 1: A
1CRN
Script completed
Jmol script terminated