script 1 started

FileManager.getAtomSetCollectionFromFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb)

FileManager opening url https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb

The Resolver thinks Pdb

loadScript ./j2s/core/corebio.z.js

JSmol exec jmolAppletB start applet null

Jmol JavaScript applet jmolAppletB__214830385288246__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolAppletB__214830385288246__)

vwrOptions:

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setting document base to "https://chemapps.stolaf.edu/jmol/jsmol/sync4.htm"

Jmol Version: 16.2.31 2024-09-14 12:17

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolAppletB (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolAppletB__214830385288246__ ready

Script completed

Jmol script terminated

JSmol exec jmolAppletD start applet null

Jmol JavaScript applet jmolAppletD__214830385288246__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolAppletD__214830385288246__)

vwrOptions:

{ "appletReadyCallback":"Jmol._readyCallback","applet":true,"name":"jmolAppletD","syncId":"214830385288246","bgcolor":"#FFFFFF","signedApplet":"true","platform":"J.awtjs2d.Platform","display":"jmolAppletD_canvas2d","documentBase":"https://chemapps.stolaf.edu/jmol/jsmol/sync4.htm","codePath":"https://chemapps.stolaf.edu/jmol/jsmol/./j2s/","fullName":"jmolAppletD__214830385288246__","statusListener":"[J.appletjs.Jmol object]" }

setting document base to "https://chemapps.stolaf.edu/jmol/jsmol/sync4.htm"

Jmol Version: 16.2.31 2024-09-14 12:17

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolAppletD (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolAppletD__214830385288246__ ready

Script completed

Jmol script terminated

Jmol 16.2.31 2024-09-14 12:17 DSSP analysis for model 1.1 - 1CRN

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer in Java for our purposes.

Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841.

All bioshapes have been deleted and must be regenerated.

------------------------------

65.1.8:

65.1.7: 1 2 3 4

65.1.6: 1234567890123456789012345678901234567890123456

65.1.5: ...............>5555<.........................

65.1.4: .....>>>>XXXXX<<<<...>>>>XX<<<<...............

65.1.3: ..............>3><3<.>33<...............>>3<<.

65.1.1: .EE...HHHHHHHHHHHTTT..HHHHHHHH..EE.......GGG..

65.1.0: TTCCPSIVARSNFNVCRLPGTPEAICATYTGCIIIPGATCPGDYAN

SUMMARY:

E : A:2_A:3

H : A:7_A:17

T : A:18_A:20

H : A:23_A:30

E : A:33_A:34

G : A:42_A:44

Script completed

Jmol script terminated

PLANT SEED PROTEIN 30-APR-81 1CRN

WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC

RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS

OF CRAMBIN

found biomolecule 1: A

biomolecule 1: number of transforms: 1

Setting space group name to P 1 21 1

1CRN

Time for openFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb): 271 ms

reading 327 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

327 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 7 ms

PLANT SEED PROTEIN 30-APR-81 1CRN

WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC

RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS

OF CRAMBIN

found biomolecule 1: A

1CRN

Script completed

Jmol script terminated

script 2 started

Script completed

Jmol script terminated

script 3 started

Script completed

Jmol script terminated

script 4 started

Script completed

Jmol script terminated

script 5 started

Script completed

Jmol script terminated

File-derived structure

script 1 started

FileManager.getAtomSetCollectionFromFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb)

FileManager opening url https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb

The Resolver thinks Pdb

PLANT SEED PROTEIN 30-APR-81 1CRN

WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC

RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS

OF CRAMBIN

found biomolecule 1: A

biomolecule 1: number of transforms: 1

Setting space group name to P 1 21 1

1CRN

Time for openFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb): 344 ms

reading 327 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

327 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 36 ms

PLANT SEED PROTEIN 30-APR-81 1CRN

WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC

RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS

OF CRAMBIN

found biomolecule 1: A

1CRN

loadScript ./j2s/core/corescriptcmd.z.js

loadScript ./j2s/core/coretext.z.js

JSmol exec jmolAppletC start applet null

Jmol JavaScript applet jmolAppletC__214830385288246__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolAppletC__214830385288246__)

vwrOptions:

{ "appletReadyCallback":"Jmol._readyCallback","applet":true,"name":"jmolAppletC","syncId":"214830385288246","bgcolor":"#FFFFFF","signedApplet":"true","platform":"J.awtjs2d.Platform","display":"jmolAppletC_canvas2d","documentBase":"https://chemapps.stolaf.edu/jmol/jsmol/sync4.htm","codePath":"https://chemapps.stolaf.edu/jmol/jsmol/./j2s/","fullName":"jmolAppletC__214830385288246__","statusListener":"[J.appletjs.Jmol object]" }

setting document base to "https://chemapps.stolaf.edu/jmol/jsmol/sync4.htm"

Jmol Version: 16.2.31 2024-09-14 12:17

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolAppletC (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolAppletC__214830385288246__ ready

Jmol-derived structure

wireframe (independently rotatable follower)

loadScript ./j2s/core/package.js

loadScript ./j2s/core/corejmol.z.js

loadScript ./j2s/J/translation/PO.js

loadScript ./j2s/core/corescript.z.js

JSmol exec jmolAppletA start applet null

Jmol JavaScript applet jmolAppletA__214830385288246__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolAppletA__214830385288246__)

vwrOptions:

{ "appletReadyCallback":"Jmol._readyCallback","applet":true,"name":"jmolAppletA","syncId":"214830385288246","bgcolor":"#FFFFFF","signedApplet":"true","platform":"J.awtjs2d.Platform","display":"jmolAppletA_canvas2d","documentBase":"https://chemapps.stolaf.edu/jmol/jsmol/sync4.htm","codePath":"https://chemapps.stolaf.edu/jmol/jsmol/./j2s/","fullName":"jmolAppletA__214830385288246__","statusListener":"[J.appletjs.Jmol object]" }

setting document base to "https://chemapps.stolaf.edu/jmol/jsmol/sync4.htm"

Jmol Version: 16.2.31 2024-09-14 12:17

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolAppletA (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolAppletA__214830385288246__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb)

FileManager opening url https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb

The Resolver thinks Pdb

PLANT SEED PROTEIN 30-APR-81 1CRN

WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC

RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS

OF CRAMBIN

found biomolecule 1: A

biomolecule 1: number of transforms: 1

Setting space group name to P 1 21 1

1CRN

Time for openFile(https://chemapps.stolaf.edu/jmol/jsmol/data/1crn.pdb): 223 ms

reading 327 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

327 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

PLANT SEED PROTEIN 30-APR-81 1CRN

WATER STRUCTURE OF A HYDROPHOBIC PROTEIN AT ATOMIC

RESOLUTION. PENTAGON RINGS OF WATER MOLECULES IN CRYSTALS

OF CRAMBIN

found biomolecule 1: A

1CRN

spacefill (independently rotatable follower)