jmol applet vibrations demo

loadScript ./j2s/core/package.js

loadScript ./j2s/core/corejmol.z.js

loadScript ./j2s/J/translation/PO.js

loadScript ./j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__214004151945221__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__214004151945221__)

vwrOptions:

{ "appletReadyCallback":"Jmol._readyCallback","applet":true,"name":"jmolApplet0","syncId":"214004151945221","bgcolor":"#FFFFFF","signedApplet":"true","platform":"J.awtjs2d.Platform","display":"jmolApplet0_canvas2d","documentBase":"https://chemapps.stolaf.edu/jmol/jsmol/vibrate.htm","codePath":"https://chemapps.stolaf.edu/jmol/jsmol/./j2s/","fullName":"jmolApplet0__214004151945221__","statusListener":"[J.appletjs.Jmol object]" }

setting document base to "https://chemapps.stolaf.edu/jmol/jsmol/vibrate.htm"

Jmol Version: 16.2.31 2024-09-14 12:17

java.vendor: Java2Script (HTML5)

java.version: 2022-06-24 05:54:49 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #FFFFFF

backgroundColor = "#FFFFFF"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

StatusManager APPLETREADYcallback set f=Jmol._readyCallback

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue MODELKITCallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SELECTCallback null

Jmol getValue SERVICECallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue SYNCCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__214004151945221__ ready

script 1 started

Viewer cachePut cache://localLOAD_https://chemapps.stolaf.edu/jmol/jsmol/data/c6h6.smol

Viewer cachePut https://chemapps.stolaf.edu/jmol/jsmol/data/c6h6.smol

FileManager.getAtomSetCollectionFromFile(https://chemapps.stolaf.edu/jmol/jsmol/data/c6h6.smol)

The Resolver thinks SpartanSmol

loadScript ./j2s/J/adapter/readers/spartan/SpartanSmolReader.js

loadScript ./j2s/J/adapter/readers/spartan/SpartanInputReader.js

loadScript ./j2s/J/adapter/readers/quantum/BasisFunctionReader.js

loadScript ./j2s/J/quantum/QS.js

loadScript ./j2s/core/corebinary.z.js

loadScript ./j2s/J/adapter/readers/spartan/SpartanArchive.js

defaultOrientationMatrix = [

[-3.999999999999994e-8 -0.9999999999999992 0]

[-3.999999999999994e-8 0 -0.9999999999999992]

[0.9999999999999984 -4.0000002400000114e-8 -4.0000002400000114e-8] ]

External AB INITIO PROGRAM: converted archive file

Energy=-229.41944483999998 KJ

Energy for model 1 = -2.2941944484D+02

66 molecular orbitals read in model 1

E2u 466.86 cm^-1

E2g 698.36 cm^-1

A2u 785.98 cm^-1

B2g 819.97 cm^-1

E1g 996.22 cm^-1

A1g 1077.56 cm^-1

E1u 1136.49 cm^-1

B1u 1147.83 cm^-1

E2u 1157.13 cm^-1

B2g 1200.74 cm^-1

B2u 1233.41 cm^-1

E2g 1323.13 cm^-1

B2u 1365.78 cm^-1

A2g 1544.34 cm^-1

E1u 1658.01 cm^-1

E2g 1762.99 cm^-1

B1u 3342.49 cm^-1

E2g 3352.46 cm^-1

E1u 3370.77 cm^-1

A1g 3385.21 cm^-1

Setting partial charges type ESPCHARGES

Time for openFile(https://chemapps.stolaf.edu/jmol/jsmol/data/c6h6.smol): 1612 ms

reading 372 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

31 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

defaultOrientationQuaternion = {-0.49999999999999944 0.5000000200000002 -0.5000000000000006 -0.4999999799999998}

Use "set autoLoadOrientation TRUE" before loading or "restore orientation DEFAULT" after loading to view this orientation.

Default Van der Waals type for model set to Babel

372 atoms created

ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation

Time for creating model: 29 ms